Plant MITE

SE4220145

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2913
Cajanus cajan
SE4220145
Mutator
M15
:0-0
TATTCAATT
AATTGA

Secondary structure and sequence

TSD TIR

5'

3'

TATTC      AAAATG       CTCC  -    -        -TTC       ACGATTAATA      TTTAA TTATAAAATATTAAATTAAATAATTATTTT
     AATTGA      ATAGAGC    GA ATGC CTCCGAAA    ATTCCGA          TAATAA     A                              
     ||||||      |||||||    || |||| ||||||||    |||||||          ||||||     |                               
     TTAACT      TATCTCG    CT TATG GAGGCTTT    TAAGGCT          TATAAT     T                              
           ------       -TTA  A    A        TGCA       ----------      ----- TTATAATTATAAAAAATTATTTACATAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220145

TATTCAATTGAAAAATGATAGAGCCTCCGAATGCCTCCGAAATTCATTCCGAACGATTAATATAATAATTTAAATTATAAAATATTAAATTAAATAATTATTTTATAATACATTTATTAAAAAATATTAATATTTTAATATTCGGAATACGTTTTCGGAGAGTATATCATTGCTCTATTCAATT

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