SE4240147

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2915
  • Cajanus cajan
  • SE4240147
  • CACTA
  • Ca2
  • CcLG07:15309694-15309979
  • TTT
  • CACTACAAAAAATGTTTCATATAGTGACATACAAAAAGTGTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT        -     GTT                 ---AAA    T   -----T   - -     ATATATGTAGGTATATACCTATTTGACATATAGTTACATACAATTTTAGTGTTGATTTTGAATGAGATTTAACAACATATT
   CACTACAA AAAAT   TCATATAGTGACATACA      AGTG CAC      ATA A ATATA                                                                                 
   |||||||| |||||   |||||||||||||||||      |||| |||      ||| | |||||                                                                                  
   GTGATGTT TTTTA   GGTATATCACTGTGTGT      TCAC GTG      ACA T ATTTT                                                                                 
TTT        C     -AC                 GGGATC    T   TTATGA   G G     TAATGAAAATGGGTGTGTTATTTATATTATATACAACGATATAACAATTTTTCACATTCATATCTGATATCACTGTGTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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