SE4220150

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2918
  • Cajanus cajan
  • SE4220150
  • Mutator
  • M16
  • CcLG11:11289160-11289554
  • TAAAAAATA
  • TAGGCTTAAATATGTTTTTAGTCCCTCAAATTTAAGATAAATTTATTTTTGGTCCCTCAAATTTAAAATTATTATTTTTAGTTCTTGTAATTTTTAAAAATTTTGTTTTATTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAA    C                 C           A  -                    C                         C          T               T  --C        ACCAATAACATATTTGAAAGTGACTAATTAAGATAGTTACGCAATATCAATCGAATTTAATGTGATA
       TAGG TTAAATATGTTTTTAGT CCTCAAATTTA GA TAAATTTATTTTTGGTCCCT AAATTTAAAATTATTATTTTTAGTT TTGTAATTTT AAAAATTTTGTTTTA TC   CTTAGGTC                                                                   
       |||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||   ||||||||                                                                   T
       ATCT AATTTATACAAAAATCA GGAGTTTAAAT CT ATTTAGATAAAAATCAGGGA TTTAAATTTTAATAATAAAAATCAG GGCATTAAAG TTTTTAGAATAAAAT AG   TATAAGTT                                                                   
ATAAAAA    A                 A           -  C                    A                         A          T               C  AAA        TAAAACAATTCTTTAAATAGTTTATAATAATGTATTTTAGATGGATAACAATGGAGATAACCACTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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