SE4220151

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2919
  • Cajanus cajan
  • SE4220151
  • Mutator
  • M16
  • CcLG11:28346736-28347130
  • TTAAAATTA
  • AGGCTTAAATATGTTTTTAGTCCCTTAAATTTAAGGTAAATCTGTTTTTGGTCCCTCAAATTTAAAATTGTTATTTTTAGTCCCTATAATTTCAAAAAATCTTATTTTAGTCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAATT                                         C                              A            A      CA                     ATATTC     TTGTAAAGAAATTTATCAAACATTATTGCATAAAATCTACCTATTGGTGTCTCTATTAGTGAAA
        AGGCTTAAATATGTTTTTAGTCCCTTAAATTTAAGGTAAAT TGTTTTTGGTCCCTCAAATTTAAAATTGTT TTTTTAGTCCCT TAATTT  AAAAATCTTATTTTAGTCCTT      AAATT                                                                
        ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||      |||||                                                                A
        TCCGAATTTATACAAAAATCAGGGAGTTTAAATTCTATTTA ACAAAAACCAGGGAGTTTAAATTTTGACAA AAAAATTAGGGA ATTAAA  TTTTTAGAATAAAATCAGGGA      AGTGG                                                                
ATTAAAAT                                         A                              C            C      AA                     --ATCC     TTATTGTATAAACTTTCACTAATTAATTCTATTAATACGTTATAGTTAGCCTAATTTACACTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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