SE4220152

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2920
  • Cajanus cajan
  • SE4220152
  • Mutator
  • M8
  • CcLG11:30889836-30890062
  • TTCATCTAT
  • GAATTTGGATCCTCTCCTGCAATATTCTCTCTCCAGCCTCTCTCCTGCAATATTAATAGCCATTAGATATATCTAATGCCTCAAATTTAATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCATCTAT                                                           C                  C         A   TTATAATTAATG
         GAATTTGGATCCTCTCCTGCAATATTCTCTCTCCAGCCTCTCTCCTGCAATATTAATAG CATTAGATATATCTAATG CTCAAATTT ATC            
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||            T
         CTTAAACCTAGGAGAGGACGTTATAAGAGAGAGGTCGGAGAGAGGACGTTATAATTATC GTAATCTATATAGATTAC GAGTTTAAA TAG            
TATCTACTT                                                           A                  C         C   TAAATTTTTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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