SE4220153

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2921
  • Cajanus cajan
  • SE4220153
  • Mutator
  • M5
  • CcLG02:34274175-34274632
  • TTCATATTA
  • ATATTAGGCTAAAACCCTAATTTGATCTCTTATAATATTAAAAAAATTAATTTGGTCCCACTTTAATTTTTTTTTTCAATTTAGTCCCAATTTATTTTAAAATTTTCAATGTAGGACTTCCGTCCAAATTTCACAAACGGCGTTAAAGATCCAAGAGAATCATGCCCGTGATTCCAAATCACGACCATGAT

Secondary structure and sequence

TSD    TIR
5'



3'
TTC    -T                   A                       -                        T                                       A       C   C            C          A   A                                 A         CGACCTGGGAACCACCTAAGATTAAGAGG
   ATAT  AGGCTAAAACCCTAATTTG TCTCTTATAATATTAAAAAAATT AATTTGGTCCCACTTTAATTTTTT TTTCAATTTAGTCCCAATTTATTTTAAAATTTTCAATGT GGACTTC GTC AAATTTCACAAA GGCGTTAAAG TCC AGAGAATCATGCCCGTGATTCCAAATCACGACC TGATTCTCA                             
   ||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||                             T
   TATA  TCCGATTTTGGGATTAAAT AGGGAATATTATAATTTTTTTAA TTAAATCAGGGTGAAATTAAAAAA AAAGTTAAATCAGGGTTAAATAAAATTTTAAAAGTTACA TCTGAAG CAG TTTAAAGTGTTT CCGCAATTTC AGG TCTCTTAGTGCGGGTACTAAGGTTTAGTGCTGG ACTAAGAGT                             
 AT    CT                   C                       A                        T                                       C       A   A            A          C   C                                 C         CCCAGCTCTAAGAGTGGTGGAGAAAAGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End