SE4230154

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2922
  • Cajanus cajan
  • SE4230154
  • hAT
  • Hat13
  • CcLG11:47871116-47871419
  • GTTCATAC
  • ACTAGGGTCGGCTCAAGCATA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTCAT        C       G    ----A    GTACAAGCCCTAACTTTAGGCCCCCAAAATATATTTTTTACTTACAAAACTTAATGAATTTGTTGTATCAATACTAATTTTGGTTTGCTGGTCATTGTCTAAGTCTAGCATTGTAAGG
      ACTAGGGT GGCTCAA CATA     GGCT                                                                                                                      
      |||||||| ||||||| ||||     ||||                                                                                                                      A
      TGATCCCG CCGGGTT GTAT     TCCG                                                                                                                      
CATACT        A       -    AAAAC    GATTTCACTCAAAACTTCAACTCAAAAAAATTTCTACTCTCTCACCATTTTTTTAGTTATCTGTGGATATTCTTTTTCCTTGAAAATCGTTTTTAATATTATGATTCTAGTCTGGATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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