SE4240157

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2925
  • Cajanus cajan
  • SE4240157
  • CACTA
  • Ca2
  • CcLG01:14807826-14808111
  • CTA
  • CACTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTA        GAAAATTGT           A   ATTCTATAGTGATATAATAAGTGTCACTAAAAACTACTTTTACCTACACAATAAATATAATATATGTTGGTATATTGTTAAAAAGTGTAGGTATAAGCTATAGTGAGA
   CACTACAA         CGTATAGTGAC CAC                                                                                                            
   ||||||||         ||||||||||| |||                                                                                                            C
   GTGATGTT         GTATATCACTG TAT                                                                                                            
ATC        ATTTACAAT           -   GTTTTTCACAGTGATATTCATATTATATACATCCATATATAGATAAACTGTATATCGATGTGTGTTAAAATTACAACTAAAACTTACTCTAAATTGTTGTATAAAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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