SE4250158

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2926
  • Cajanus cajan
  • SE4250158
  • PIF/harbinger
  • To8
  • CcLG03:1550832-1551092
  • TAA
  • GGGTTTGTTTGCATAAACTTTTCTAGAAACACTTCTAGAAGAGCAAAATAAGAAGGAAAACTAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA     T     C  A             A     C   A  A C      A         C     -A     CTC    CACTAAAATTAGTGTATGCATGAGCTGTTCTATAGAAATTCTCTCCTATT
   GGGTT GTTTG AT AACTTTTCTAGAA CACTT TAG AG G AAAATA GAAGGAAAA TAAAA  AGCTT   CATA                                                  
   ||||| ||||| || ||||||||||||| ||||| ||| || | |||||| ||||||||| |||||  |||||   ||||                                                   
   TCCAA CAAAC TA TTGAAAAGATCTT GTGAA ATC TC C TTTTAT CTTCCTTTT GTTTT  TCAAA   AGGT                                                  
 AA     -     C  A             C     A   C  C T      C         A     AT     --A    ATTCAATTTCAGTCAATACAAACTCAATTTTTATTCTAAAACCTCTTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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