Plant MITE

SE4240164

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2932
Cajanus cajan
SE4240164
CACTA
Ca2
CcLG03:25201469-25201754
TAA
ACACTACAGAAAATGTTA

Secondary structure and sequence

TSD TIR

5'

3'

TA        -      -    CA           ACAAAAAGTGTCACTATAAGTATAATATATGTAGGTATATATTTATTTGACATATAGTTACACACAATTTTAGTGTTGATTTTGAATGAGATTTAACAATATATTTTAT
  ACACTACA GAAAAT GTTA  TATAGTGACAT                                                                                                             
  |||||||| |||||| ||||  |||||||||||                                                                                                              
  TGTGATGT CTTTTA CAGT  ATCACTGTGTG                                                                                                             
AA        T      A    AT           TAGGATATCATTATGTTATACACAGTGATTTTTAATGAAAATGAATATTTTATTTATATTATATACAACCATATAACAATTTTTCATACTGATATTCGATATCACTGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4240164

TAACACTACAGAAAATGTTACATATAGTGACATACAAAAAGTGTCACTATAAGTATAATATATGTAGGTATATATTTATTTGACATATAGTTACACACAATTTTAGTGTTGATTTTGAATGAGATTTAACAATATATTTTATGTGTCACTATAGCTTATAGTCATACTTTTTAACAATATACCAACATATATTATATTTATTTTATAAGTAAAAGTAATTTTTAGTGACACATATTGTATTACTATAGGATGTGTGTCACTATATGACAATTTTCTTGTAGTGTAA

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