Plant MITE

SE4240165

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2933
Cajanus cajan
SE4240165
CACTA
Ca2
CcLG06:12895245-12895530
TTA
ACACTACAA

Secondary structure and sequence

TSD TIR

5'

3'

TT         GAAAATTGC    T       C  ATTCTA         - ATATGTGTCACTAAAAACTACTTTTACCTACATAATAAATATAATATATGTTGGTATATTGTTAAAAAGTGTGAGTATAAGCTATAGTGATACA
  ACACTACAA         CATA AGTGACA AC      TAGTGACAC A                                                                                              
  |||||||||         |||| ||||||| ||      ||||||||| |                                                                                              C
  TGTGATGTT         GTAT TCACTGT TG      TTTTTCACA T                                                                                              
AT         ATTTACAAT    C       A  ------         G GATATTCATATTATATACATCCATATATAGATAAACCGTATATTGATGTGTGTTAAAATCACAACTAAAACTTACTCTAAATTGTTGTATAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4240165

TTACACTACAAGAAAATTGCCATATAGTGACACACATTCTATAGTGACACAATATGTGTCACTAAAAACTACTTTTACCTACATAATAAATATAATATATGTTGGTATATTGTTAAAAAGTGTGAGTATAAGCTATAGTGATACACAAAATATGTTGTTAAATCTCATTCAAAATCAACACTAAAATTGTGTGTAGTTATATGCCAAATAGATATATACCTACATATATTATACTTATAGTGACACTTTTTGTATGTCACTCTATGTAACATTTATTGTAGTGTTA

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