SE4260173

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2941
  • Cajanus cajan
  • SE4260173
  • Micron
  • Mim1
  • CcLG10:16666979-16667393
  • ATTTTAT
  • TGAGAAGGGATCCTTTTACTCCAGGAGTAAGTCTACCTAGACTTACTATGTTCAATAACTCATGTTTTACATCAAATTTTAACGATCTAACTGTTCAATTTAAAGTTCTTAATGCATAGATCAAATCTGTAAATTTTTAGAAAATTTGAAAATCATTTTATACTTCATTTTATTAATTCAAATTAGCAGATAATT

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTTATT    A                CAG        C   C        CTA                                  C                                           C                 T        C   TT   C   A           CA       -----        AT
        TGAG AGGGATCCTTTTACTC   GAGTAAGT TAC TAGACTTA   TGTTCAATAACTCATGTTTTACATCAAATTTTAA GATCTAACTGTTCAATTTAAAGTTCTTAATGCATAGATCAAAT TGTAAATTTTTAGAAAA TTGAAAAT ATT  ATA TTC TTTTATTAATT  AATTAGC     AGATAATT  
        |||| ||||||||||||||||   |||||||| ||| ||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||| ||| |||||||||||  |||||||     ||||||||   
        ACTT TCCCTAGGAAAATGAG   CTTATTCA ATG ATCTGAAT   GCAAGTTATTGAGTACAAGATGTAGTTTAAAATT CTAGGTTGACAAGTTAAATTTCAAGAATTACGTATCTAGTTTA ATGTTTAAAAATTTTTT AACTTTTA TAA  TAT AAG AAAGTAATTAA  TTAGTTG     TTTATTAA  
TTTATTTT    C                ATA        A   A        AAG                                  A                                           A                 T        C   TC   T   C           AC       CATAT        AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End