Plant MITE

SE1030001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2942
Chlamydomonas reinhardtii
SE1030001
hAT
Hat1
chromosome_5:1530304-1530806
GTGGCCCC
GGCCCCCAGCGCTCGTATCTT

Secondary structure and sequence

TSD TIR

5'

3'

GT    C                CC     - CGGAACGAAATTTGCCCAAAAAGGCCTCTGGCGGACGAAATTTTTTTGACCTTGACTTGGAATTTCGGCCAAAACGCACGGGATCTTGGGGGGTCTTTCGGCAAACAGACGAAGACATTTTTGGGACTTCGGCCACTTTTGGCCAAGGACAGGGGGTTCCAGCGGCTACTCCACGTCCGAAACCTGCGTGGCATATGGTAAGAAGGCTCAAAGGGCTGTAT
  GGCC CCAGCGCTCGTATCTT  TTCGT T                                                                                                                                                                                                                             
  |||| ||||||||||||||||  ||||| |                                                                                                                                                                                                                              
  CCGG GGTCGCGAGCATAGAA  TGCTT C                                                                                                                                                                                                                             
CC    T                --     C GTCCCCGCCGCAGTCACCGGCTTAAGGAATTTTACCGAAGCAAATCAACTGCTTTGTCCGACGGCGGCGAAGCAAGTGGGGTTTTAAAAAGGCCCCCGAGGCGGGGGCTGGGCGTGCTACAGCTGTGGCTGTGCTGTGCGGGTGAGGAGGGGACGAAGGGCGGCTGGGTTGGAGTGAGAGGGCGGTCCCCTTGGGGACAGAGGGCGGCAGTTGTGGGTATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1030001

GTGGCCCCCAGCGCTCGTATCTTCCTTCGTTCGGAACGAAATTTGCCCAAAAAGGCCTCTGGCGGACGAAATTTTTTTGACCTTGACTTGGAATTTCGGCCAAAACGCACGGGATCTTGGGGGGTCTTTCGGCAAACAGACGAAGACATTTTTGGGACTTCGGCCACTTTTGGCCAAGGACAGGGGGTTCCAGCGGCTACTCCACGTCCGAAACCTGCGTGGCATATGGTAAGAAGGCTCAAAGGGCTGTATCTATGGGTGTTGACGGCGGGAGACAGGGGTTCCCCTGGCGGGAGAGTGAGGTTGGGTCGGCGGGAAGCAGGGGAGGAGTGGGCGTGTCGTGTCGGTGTCGACATCGTGCGGGTCGGGGGCGGAGCCCCCGGAAAAATTTTGGGGTGAACGAAGCGGCGGCAGCCTGTTTCGTCAACTAAACGAAGCCATTTTAAGGAATTCGGCCACTGACGCCGCCCCTGCCTTCGTAAGATACGAGCGCTGGTGGCCCC

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