SE1030002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2943
  • Chlamydomonas reinhardtii
  • SE1030002
  • hAT
  • Hat2
  • chromosome_9:3945493-3946277
  • GCTCTTGT
  • GTCAACCCGGGTTCACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GCTCTT                  CAGTTTGGG       CCCAAAACTGCACAACCTTTGGACCTGTGTTTAGTCGTGGTAGTACAGTCCGACGTGGAAACCAACCTTGCCTACCCCCGCCTGTCGTGTCAGATTCACCGTCCGACAGTACTACCACTGCCGTACGGCCCTTCCCGTGCGGGGGGTCATGGGGGTGGGCAGGGGGGTCCCCGTGGCCAAACTGGTCTCCCCTGAGTCCCCCACGCTCTCAGCCCCTCTGTGCATGTAGTAATGACTTGCTGGTCAAGTGGGGGGGCGGTCCGCGCTCGCCTGAGGTCGAAATGGGCGGGTTTTGGCCCGCCAGGCATGTGCCCGATGGGCGCGTGTCGGTCCGATCGGGCCCAAGTGTGCTGGAG
      GTCAACCCGGGTTCACTT         GCACCGT                                                                                                                                                                                                                                                                                                                                                                    
      ||||||||||||||||||         |||||||                                                                                                                                                                                                                                                                                                                                                                     
      CGGTTGGGCCCAAGTGAG         CCGCACG                                                                                                                                                                                                                                                                                                                                                                    
TGTTCT                  -------CC       GGTATGTGCGGCGTGGCAGGTTTCTGGTTTGGAACGGATTCCGCATATGTACTGTATACATACAATACTGAACAACAAAATTCGGGACCGCGCCGGACGGGCGAGCGGGTCGAGCGCTTTACGTCGCTGTACGGGGCTGTTACATGTGCTTCTCGACGAAAATCGGGAGCGTTTCGGAACTTAAAGGTAAGAGTATCGACTTTCATCTGTGCCGTGGTTAGTGCCGAACTTTTTTACCGAGGAGCTCCCTGGAGCCAGCGCTTTAACGGCCAGCCGTCTCGGAGTGTAAAACGGGGCCCTATGCAAGGTTACGTTATAACCCATAGATTTATTGTATAACTCACTCAATGACGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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