SE1030003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2944
  • Chlamydomonas reinhardtii
  • SE1030003
  • hAT
  • Hat3
  • chromosome_14:232754-233018
  • AATGTGGG
  • CAGTGCTCGTATCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATGTGGG                 A   -   G  - AGAAATCT  -      - ---  -  - GAAGGCGGAGAAAAATTTTTGGGTTTGGGTGCCACGCATCAACGCAGTGTAGACGGTTTTGGCCGGTTTTGGCGC
        CAGTGCTCGTATCTTCC TCT ACA TG T        GC CCAAAA T   CC GC C                                                                           
        ||||||||||||||||| ||| ||| || |        || |||||| |   || || |                                                                            
        GTCACGAGCATAGAACA TCT CGG GA T        CC TGGGCC T   TG GT C                                                                           
GGGTGTAA                 -   A   -  G --------  G      G AGA  T  A GCATCTACTGGGACTGGCGCCGTAGATGTGAATTCGGGGGTTCGGGGGGTTTTGCAGATGCGAAGGGGGTAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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