SE1030004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2945
  • Chlamydomonas reinhardtii
  • SE1030004
  • hAT
  • Hat4
  • chromosome_10:811526-812009
  • CCTCCGTG
  • CGTGCAGGGTTGCCTA

Secondary structure and sequence

TSD    TIR
5'



3'
CCTC  --T               -    GA    --    CCATAATACGCGTATTAATACAGCGTACTAGGATTCCTAGTACAGTACGGTAAAATACGGTGCATAATACGCTGGGCCAGGAAATCCGGGGGGGAAGCCGACGCAAACACGGCACGCGTGCCCGCACCATGCCCGAATCGGTGTGAATCTGGATTTGCGCGGTCATAGTCTTCTAGCGGAATTTCCTTCAACTTATTATGCTCAT
    CG   GCAGGGTTGCCTAGT ACGC  CCCT  CTCT                                                                                                                                                                                                             
    ||   ||||||||||||||| ||||  ||||  ||||                                                                                                                                                                                                             A
    GC   CGTCCCAACGGATCA GCAT  CATG  CATG                                                                                                                                                                                                             
  GT  CTC               A    --    CG    ATACATGATGCATGACATGATGCATGACATGCGACGGGAGCAGCCGATCATGCAACCTTTTATGCAACACGACCCCTTTGGTCGCCCCACCCGGCACCGTCGCGGCACCGACCCGCTCCCCGCGCTCCCCACGACCTTTCCTACAGGCAGCTTCAAACGCTTGGTACCGACGAGAGGCGTGACGTCGACACAAGAGAATGTTGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End