SE1030005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2946
  • Chlamydomonas reinhardtii
  • SE1030005
  • hAT
  • Hat1
  • chromosome_5:1530304-1530806
  • GGGGCCAC
  • GGCCACCAGCGCTCGTATCTT

Secondary structure and sequence

TSD    TIR
5'



3'
GG    A                ----      ---     ----       -- CA    CC   TTC ---     AT  -------  TCGTTTAGTTGACGAAACAGGCTGCCGCCGCTTCGTTCACCCCAAAATTTTTCCGGGGGCTCCGCCCCCGACCCGCACGATGTCGACACCGACACGACACGCCCACTCCTCCCCTGCTTCCCGCCGACCCAACCTCACTCTCCCGCCAGGGGAACCCCTGTCTCCCGCCGTCAACA
  GGCC CCAGCGCTCGTATCTT    ACGAAG   GCAGG    GGCGGCG  T  GTGG  GAA   C   TTAAA  GG       CT                                                                                                                                                                                
  |||| ||||||||||||||||    ||||||   |||||    |||||||  |  ||||  |||   |   |||||  ||       ||                                                                                                                                                                                C
  CCGG GGTCGCGAGCATAGAA    GCAAGC   GCTTT    GGGTTTT  C  GGAG  ACC   G   GCTTT  AA       GG                                                                                                                                                                                
CA    G                GGAA      CTT     AAAC       TC --    --   --- CCT     --  AAAAACT  AACTGAACCTTAAAGCCGGTTTTGCGTGCCCTAGAACCCCCCAGAAAGCCGTTTGTCTGCTTCTGTAAAAACCCTGAAGCCGGTGAAAACCGGTTCCTGTCCCCCAAGGTCGCCGATGAGGTGCAGGCTTTGGACGCACCGTATACCATTCTTCCGAGTTTCCCGACATAGATACC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End