SE1030006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2947
  • Chlamydomonas reinhardtii
  • SE1030006
  • hAT
  • Hat5
  • chromosome_16:2949299-2949945
  • GACCTAGG
  • CCTAGGCCACACGGGTATGACGCCGGTCTGAGGAGGGGCAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
GA      -                        A -      -        -  ----------   ---   CG  -      C   --   GCGCATGATTAGCCTCCCCCTTTCAGGAATTAACTTATAGGATACATAAGGATAGTAAAGTCTGGCTCCCGTCGCATTTTGTGAGGGTGGCCGTCACCACATTTCGCGAGGCCTGCTTTCGCCAGAGTCGCATTCTTAAGCCCAGATACATGTGTATAGTCTCCTTGTATGTATGTTAGACGACGGCAATTCAAACTGGCATCAGAGCGCGATTATTGCGCAGACTTTAGAAGCATGTTGAC
  CCTAGG CCACACGGGTATGACGCCGGTCTG G GAGGGG CAAATTCG TG          TCA   ACA  TG TTTCTC GCG  CAC                                                                                                                                                                                                                                                  
  |||||| |||||||||||||||||||||||| | |||||| |||||||| ||          |||   |||  || |||||| |||  |||                                                                                                                                                                                                                                                  T
  GGATCC GGTGTGCCCATACTGCGGCCAGAC C CTCCCC GTTTGCCG GC          GTC   AGT  GC ACATCA AGG  TGA                                                                                                                                                                                                                                                  
 C      A                        C T      A        T  ACCTAAAACT   CCA   --  C      -   TG   TTTTCAAACCGTCGTCCAGGCGCTCCACCAGCTGTTCGGTGCCGACTGCACTGGGTCGACCTTGATGTAGCGCTGATCGACGATCTGCCGAACCGCAGGTCCCCTACACAAGGGCGGACGAACCGTACCAGCCTGTGCCTGTAGCCCAGCTGGTGACTTAATCGATGGTCGCAAGACGATCATAATAATTTCATGATACCTCTGGAGTACATGAGATAAACGCCGGATAAGCCACTACAGCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End