SE1030007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2948
  • Chlamydomonas reinhardtii
  • SE1030007
  • hAT
  • Hat6
  • chromosome_9:1418726-1419379
  • CCGGGCCC
  • GGGCCCCAAGCGGGTCCCACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CC      --                CAGGAAAAAG      CCCAGGGAGGCGCCCACGGGATGGCACCAAAACCCCTTGGCAGATTGTCCTTCAAGGAAGCCGCCGCGTCTACGGACTCATCCATCTCGGCGCCTATGGCTTGCTGATGCTTGAAGGACAATCTATCAGGGGGGGTTCACCGCGTGCCGTCCGGGGGGTGCGTTTCCCCAGCCAAACCCGCACGCCGAGGAGGCCAGGAGACGTCGCCCCGAGAAAAATGCAGAGCGGGATACAGACTCCGCCACTTAATATATATGTTACATGCAATCTGTTGGAGCAATAGCGCTTG
  GGGCCC  CAAGCGGGTCCCACTC          CGTGTC                                                                                                                                                                                                                                                                                                 
  ||||||  ||||||||||||||||          ||||||                                                                                                                                                                                                                                                                                                 A
  CCCGGG  GTTCGCCCAGGGTGAG          GCCGGG                                                                                                                                                                                                                                                                                                 
        CC                -----CGCGT      ATGCCCGGCCAGCACAGGGGTCGGGTCATGGAAAGGATATCGTAGAATATGGTGTGTATTCCAGTAATCTCATTGGGCCCCCGTAACTTAGCTCGGCCCCGGCTGGAGCTTGTAGATTTACAGCGCAAGCGGTCCTGTGCGGTATGGTCCGGTCTGTCATCGGATTGATGTGGATGCGTATATAGACACAACTGCCGTTAGCTATTTCGGGCTTTTGTTGCGGATACATCCTACAACCGAAGCCAGTTAAAGCGCTGAACTCGGAGCTGCTCGTGCAAAATCGGACGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3