Plant MITE

SE1030009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2950
Chlamydomonas reinhardtii
SE1030009
hAT
Hat8
chromosome_1:7352003-7352256
CATACAGA
CAGGGCTCCTATCT

Secondary structure and sequence

TSD TIR

5'

3'

CATACAGA     C  C     -------       TCCAGACATTAATTGGCCATTTTGGCTTTTTCCTAGACATTCCTCCCGGGGGCTAATGTCTGGGGCGAGACTTTGTTGGCCCGGGTTTGGGGCG
        CAGGG TC TATCT       TAATGTC                                                                                              
        ||||| || |||||       |||||||                                                                                              G
        GTCCC AG ATAGA       CCCCATT                                                                                              
AGACATAC     C  C     ACAAAAA       ACAGATCGAGGTCTGTTTTTGCCGGCCCACCGGCGGCAGAAAACAGACCCGTGTACCGCCAAACCCCCGAAGAGGTATCCTTAAGCCTGTTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1030009

CATACAGACAGGGCTCCTATCTTAATGTCTCCAGACATTAATTGGCCATTTTGGCTTTTTCCTAGACATTCCTCCCGGGGGCTAATGTCTGGGGCGAGACTTTGTTGGCCCGGGTTTGGGGCGGGTTTTGTCCGAATTCCTATGGAGAAGCCCCCAAACCGCCATGTGCCCAGACAAAAGACGGCGGCCACCCGGCCGTTTTTGTCTGGAGCTAGACATTACCCCAAAAACAAGATACGACCCCTGCATACAGA

Copy Cancel