Plant MITE

SE1030011

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2952
Chlamydomonas reinhardtii
SE1030011
hAT
Hat9
chromosome_3:4432512-4433220
ACTTGCAC
TGCACCAGGGTTGCAC

Secondary structure and sequence

TSD TIR

5'

3'

ACT    --C                   -------  ----         TACGTACTAGTACGTACTGAGTACTAGTACGCCTCTCCTGGGTCTCAGTACGGCGCAAAATACGCCAGGGGGGCGGGGGGCGGGGGTGTGGGGGTCGCCGGCGGGTGCCGGTGGCCGGTGGTCGTGCCGTGTCAATGCGTCGGTGGCACAGTGCAGTGGCGAGAGGCAACATAGACGCAACATAGGCAACGTCTTAAGCATAATATGATTCTGTGTGTGTAGTTGCTCACAACCAAAAGCCTGATATCAGTGACACGATGGCCGATGCGATGCGCGAACCGAGCCTGCCCTATTGGATACGCGCAATGGAG
   TGCA   CAGGGTTGCACAGTACTCA       GT    ACGTGTTAG                                                                                                                                                                                                                                                                                                                       
   ||||   |||||||||||||||||||       ||    |||||||||                                                                                                                                                                                                                                                                                                                        
   ACGT   GTCCCAACGTGACATGATC       GA    TATGCGCAT                                                                                                                                                                                                                                                                                                                       
  C    TCA                   GGTAAAA  ATAT         AATTATGCGTCATGTGTCGAAAGATCATGTTATGTGGTATTAAGTGAATATTATGCGGCCGCTCGTTCCCAATCATGCACGATATCATGCAGGGTACGTTGGATACGGGCCAGGGTAACGTTTAAAGCGAGAGGCACAAGGAGGAATCATAGGAAGGGACATAGGATGATATGTAATGGTATGAGCTCCGGCAATGTCGAGCGATACGACAACCTTTGCGTATGAACAATCATTTACAGCTCTTTACTCGCCTCACTGTTGACGCGTCGGAAAAACGGATGACAAACCGGTAGTTCATATAGGTAGGTCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1030011

ACTTGCACCAGGGTTGCACAGTACTCAGTACGTGTTAGTACGTACTAGTACGTACTGAGTACTAGTACGCCTCTCCTGGGTCTCAGTACGGCGCAAAATACGCCAGGGGGGCGGGGGGCGGGGGTGTGGGGGTCGCCGGCGGGTGCCGGTGGCCGGTGGTCGTGCCGTGTCAATGCGTCGGTGGCACAGTGCAGTGGCGAGAGGCAACATAGACGCAACATAGGCAACGTCTTAAGCATAATATGATTCTGTGTGTGTAGTTGCTCACAACCAAAAGCCTGATATCAGTGACACGATGGCCGATGCGATGCGCGAACCGAGCCTGCCCTATTGGATACGCGCAATGGAGCTCTGGATGGATATACTTGATGGCCAAACAGTAGGCAAAAAGGCTGCGCAGTTGTCACTCCGCTCATTTCTCGACATTTACTAACAAGTATGCGTTTCCAACAGCATAGCGAGCTGTAACGGCCTCGAGTATGGTAATGTATAGTAGGATACAGGGAAGGATACTAAGGAGGAACACGGAGAGCGAAATTTGCAATGGGACCGGGCATAGGTTGCATGGGACGTACTATAGCACGTACTAACCCTTGCTCGCCGGCGTATTATAAGTGAATTATGGTGTATTGTACTAGAAAGCTGTGTACTGCGTATTAATACGCGTATTATAAGAAAATGGCTAGTACAGTGCAACCCTGACTTGCAC

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