SE1030012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2953
  • Chlamydomonas reinhardtii
  • SE1030012
  • hAT
  • Hat5
  • chromosome_12:7068098-7068711
  • GGCTGAGC
  • GGCTGAGCCCACACGGGTATGACGCCGGTCTGAAGAGGGGCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
    G                           -A       -    A   TGTCCACACGTGTTTCTCCACGCTCGCGTAGACTTAGCCTCCCTCTTTCAGGAATTAACTTATATGACATATAAGGATGCAAAAGTTTGACTCCCTTCGCATTCTGCGAGGGTGGCTGTCACCACATTTCGCGAGGCATGCTTTCGCCAGGGTCGCACTCTGAAGCCCGGGAGCATGTTTCTAGTCTCCTTGCATGTATGTTTGATGACGGCAACAATAATTGGCATCAAAGCGCGGTAATTGCGCAGACTTGAGAAG
GGCT AGCCCACACGGGTATGACGCCGGTCTG  AGAGGGG CAAA ACG                                                                                                                                                                                                                                                                  
|||| |||||||||||||||||||||||||||  ||||||| |||| |||                                                                                                                                                                                                                                                                   
CCGA TCGGGTGTGCCCATACTGCGGCCAGAC  TCTCCCC GTTT CCG                                                                                                                                                                                                                                                                  
    G                           CC       A    G   TGTCGGACCAATGGACGGAACCGGAACAGCAGGCCAGGGGTTTGAGGCCGATATCCAGTCCGTGATGGGCTGTGCCGGATCTGACCAGATCGAGCGCACCGCAGGCCCCCTACGCAAGGCGGGTCGAACCGTGCCAGCCGCTGCCAGCAGTCCGGCTGGAGGCTTAGTCGATGGTTGCAAGACGTTAATAGTGGAACTATGATATCTCTGGAGTTTATAAAACAAACGCCGGATAAGCCACTGCAGCGCCACTTGTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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