Plant MITE

SE1030013

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2954
Chlamydomonas reinhardtii
SE1030013
hAT
Hat6
chromosome_15:54187-54837
CACGCGAC
CGCGACCACCCGGGTGCCACTC

Secondary structure and sequence

TSD TIR

5'

3'

CA    AC                  GGAAGTCCCTAGGGACTGCGTGAGTCCAAGCCCCTTGATCACTAAAATGGCATCATGTGACATATATAATGGTCTCTGAATGGTCCCGGGGCATAAATTCGAGCGAGAGCCGAAGTCGAAATGCTAAATGTCGCGGTCGCCAGGACCGAACAGAATTTGCCCGACGCTGTCAGGATTTACTCTATGAATGAATCTAAGTCGGCGGCACCTGGTCTAGCCCCAAAACACCGCCTATGCGAGATATGGGCTTCGGTCAATTTCGCGACTTGAGCCCCGACCAACGTGTTTTAGTCCTCTGT
  CGCG  CACCCGGGTGCCACTCGG                                                                                                                                                                                                                                                                                                           
  ||||  ||||||||||||||||||                                                                                                                                                                                                                                                                                                           C
  GCGC  GTGGGCCCACGGTGAGGG                                                                                                                                                                                                                                                                                                           
CA    AC                  ACAAAACCGACTCAGGTTTGCGACCGGGTGGAACCACCGCGGCCATCGTGGAAGTCTGGATAAGCCGGACCTTACAAACTGTGCAGCAACGTTGGCTGTGCCCAAGACCCGGCCCCAACTGCATCCGGCTCACCCAGACGTCCCAGCATGCCGCGTACGGCAGGCCCCCCACGTAAAGGGGTCGGTTTGGGCGTGCAAGCCTCCCGAGACCCTCAGCGGGCGCCCTTTAGGATGGTGTGCTAAATCTGCGGCGTAAAAACATCCATGTATAACTTGTCGTAGTTACCGGTTATCGCGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1030013

CACGCGACCACCCGGGTGCCACTCGGGGAAGTCCCTAGGGACTGCGTGAGTCCAAGCCCCTTGATCACTAAAATGGCATCATGTGACATATATAATGGTCTCTGAATGGTCCCGGGGCATAAATTCGAGCGAGAGCCGAAGTCGAAATGCTAAATGTCGCGGTCGCCAGGACCGAACAGAATTTGCCCGACGCTGTCAGGATTTACTCTATGAATGAATCTAAGTCGGCGGCACCTGGTCTAGCCCCAAAACACCGCCTATGCGAGATATGGGCTTCGGTCAATTTCGCGACTTGAGCCCCGACCAACGTGTTTTAGTCCTCTGTCGAGCGCTATTGGCCATTGATGCTGTTCAATATGTACCTACAAAAATGCGGCGTCTAAATCGTGTGGTAGGATTTCCCGCGGGCGACTCCCAGAGCCCTCCGAACGTGCGGGTTTGGCTGGGGAAATGCACCCCCCGGACGGCATGCGCCGTACGACCCTGCAGACCCACTCGGCCTACGTCAACCCCGGCCCAGAACCCGTGTCGGTTGCAACGACGTGTCAAACATTCCAGGCCGAATAGGTCTGAAGGTGCTACCGGCGCCACCAAGGTGGGCCAGCGTTTGGACTCAGCCAAAACAGGGAGTGGCACCCGGGTGCACGCGAC

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