SE1030014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2955
  • Chlamydomonas reinhardtii
  • SE1030014
  • hAT
  • Hat2
  • chromosome_16:61521-62311
  • TCCACATC
  • CAACCCGGGTTCACTCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TCCACATC                -  -------      CCCATACACGCCGCACCGTCCAAAGACCAAACCTTGCCTAATGCTTATACATGACATATATATGTTATGACTTGTTGTTTTAAGCCCTGGCGCGGCCTGCCTGCTCGCCGAGCTCGCGAAATGCAGCGACATCCCCCGACATTGTGCACGAAGAGCTGCTTTTAGCCCTCGCAAAGCTCGAATTCCCATCTTTATAGCTGACAGTAGACACGGCATCAATCACGGCTTGAAACAATTGCTCCTCGAGGGACCTCGGTCGCGAAATTGCCGGTCGGCAGAGCCTCACATTTTGCCCCGGGATACATTCCAATGCAATATTGGGTATCTAAATAACATATTGAATGAGTTACTGCTCTCTC
        CAACCCGGGTTCACTC GG       GGCGTG                                                                                                                                                                                                                                                                                                                                                                       
        |||||||||||||||| ||       ||||||                                                                                                                                                                                                                                                                                                                                                                       C
        GTTGGGCCCAAGTGAG CC       GTGGCA                                                                                                                                                                                                                                                                                                                                                                       
CTACACCT                G  AGGTCCG      GGTTTTTACGCGGTAGAAACTGTGAACTATAGCTGAGACCCTATGGTGGCCTTTTCTGTTTGTTGGACTGGATGGGGGGTGTTTAGCACAGCACAGTCTAAAGAAAAGGCTGCCATAGGGGTCACGGCATGCCGGGAAGGGCACGCCCCCCAGAACCCCCGCCTATCCCCCCAAGGGGCTGCGGTTTGACCAGAGGGGACTCAGGGGGTGCGAGAGTCGGGGAGGCACGTACATCATTACTGAACGACCAGTTCACCCTCCCGCCAGGAGCGAGCGGACTCCAGCTTTACCCGCCCAAAAACCGGGCGGTCGGTACGCGGGCTACCCGCGCACAGCCAGGCTAGCCCGGTTTCACACGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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