SE1030015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2956
  • Chlamydomonas reinhardtii
  • SE1030015
  • hAT
  • Hat10
  • chromosome_9:4412443-4413241
  • CCTACGCC
  • CACGCGGGTACCACTCCGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTACGCC                C  - ---A     CTAGGGACTGCGTGTGTCCAATGCCCTAGACTGCCGAAATGTTATCATGTGACATATAATAAGGTCCCTGAATGATTTCCGGGCATAAACTCGAGCGGGAGCCGAAGTCGAAATGCTAAATGTCGCGCTCGCCAGGACTTACTGGAATTCGCCCTACGCTGTCCGGATGACATATATAGGTGAACCTTAGTAGACGGCACTAGATACAGGCCCAAAATACCGCCTATGCGAGATATGGGCTCTGGTCAATTTCGCGACTTGAGCCCTGACCAACATGTTTTGTCCTCTGCCGAGCGCTAATGTCCACTAATGATGTAAGTTATGTACCTACAAAAAGGCGGCGTCTAAATATTGCGGTAGGAT
        CACGCGGGTACCACTC GG C    AGTCC                                                                                                                                                                                                                                                                                                                                                                           
        |||||||||||||||| || |    |||||                                                                                                                                                                                                                                                                                                                                                                           T
        GTGCGCCCATGGTGAG CC G    CGACA                                                                                                                                                                                                                                                                                                                                                                           
CCGCATCC                A  A AAAA     CAGGTTTGAAACTGTCGGACCATCTGGGTTGTCCATAGTAGACTGTTCTGGCGGTCGTATGGGTGCCGAAGCATAGCAACACATCATATGCCAATGATACCACGCCTCGACTCGTCTACTTTGGACTTTCCGGCATGCCGACGTCGGCACGTACCCCACACGTTACCCTGTGCGTTTATAAAAGCAGCACTTTTGATGTTCGCACTATCGCACTGCCTATCGCATGCGTGTCACATACGTCCTATGCGTTAGCGGTGACATTTTCCTCATCCGTAGTCTTTCAATACACGTGTTAACAGGCCCCCCCACGCACGAGGTTCGGTTTGGGCGTGCGAGCCTCCCGAAACCCTCAGCGGGCTCCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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