SE1030017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2958
  • Chlamydomonas reinhardtii
  • SE1030017
  • hAT
  • Hat11
  • chromosome_16:6978985-6979530
  • GTATCGGG
  • TCGGGCAGAGGTCGGCA

Secondary structure and sequence

TSD    TIR
5'



3'
GTA    --G            AACGCATTTTTTCT   G       CAG  -  ATTTCGGTAAACCCCAACCGGGGGGTGTGGGGGGTGTCCCCCCAGCCGGGGGTCCGGGGGCGGGAGCCCCCGGAGAAAATTTTCGCATATCGGGCCTCAAATATGTGCATTTTACTAGGGTTTCCGCGTGTGCAAGGCTTGCATTCGTCTTACGTGTTCAACAGCACATGCCTGGGCAGCTGCTCTGTGGCAGGCAGCCACAAATCCTCGCAATCCCCCTCCGTCCA
   TCGG   CAGAGGTCGGCA              GCT CGGGTCC   AC CG                                                                                                                                                                                                                                   
   ||||   ||||||||||||              ||| |||||||   || ||                                                                                                                                                                                                                                   G
   GGCT   GTCTCCAGCCGT              CGG GCCCAGG   AA CC                                                                                                                                                                                                                                   
  G    ATG            -----------ATT   A       ---  G  CCGGGAGTCTACATGGGCGTTGGCTTTAGCTCTTATCGGTTGGCGACGCCCATGAATGTGGTGGCTTTAGCGACGTCTTTGGTTTTAACGGGGGGTTTTGGCCGGGTTTTGTACTAACTGGACGAGAACCAAATGGGCTTTACGGGGGTTTTGGGGAACTTTTACAGCGTTAAACTTCGCGTTAGACGTTTTAAAGAAACCCCGACGACGGGGCCCCGGCCGAACGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End