Plant MITE

SE1050018

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2959
Chlamydomonas reinhardtii
SE1050018
PIF/harbinger
To1
chromosome_6:5906900-5907643
TTA
AGGGGGGTTTCACATGTG

Secondary structure and sequence

TSD TIR

5'

3'

TT                  -----   TGCGAAGCTAGCTTCGGGTCGAAACCAGGTCGAAACCAGGTCGAAACCACCCCCGAAACCAGGTCCGAAGCCAGCTCGCGAATCCGGGTCCGCAGCCCGGATTCGCCCAACACACATACTTAGTTTCGAGACGTCTGAAATTTTCTATACTATTTTCTTACTCCAATCATGTGATATCAACCCCACTTGGACGCCGAAACCCTCGCGGCGACGAGCATTGCTGTGTGCCGTGGAGCAGAGTGCGCTTATAGTTGCGACAGCCTCCATCAAAATGGTTATGATCTTCATACTATTATAGTTTAGGTGGGAGCGGGGCTAGAGCATCCTCCATGAGCGCGCACGCCTC
  AGGGGGGTTTCACATGTG     ACA                                                                                                                                                                                                                                                                                                                                                          
  ||||||||||||||||||     |||                                                                                                                                                                                                                                                                                                                                                          G
  TCCCCCCAAAGTGTACAC     GGC                                                                                                                                                                                                                                                                                                                                                          
AT                  TGTTG   CAAAGCCACTTAGGTGGACCGAAGCCGCTTCGGTCCCCGCTTAGGCTAAGTGTACGCCGACGGAGCTTAGGTGGAACCCACCCGCGGTTAGGTCGAGACCTTCCCGGCTTAATACAGAGGCGTATGTTAGGGTCGCGAGGGTATGAGAATAAAATGTGCGTATCACTCAAGGGCTACGCACTGAGCGGGCGTTGGCGCTGTACGGCTCAGGTGGAGCGAGGTATGTGGCGGGGGCTTGTAAGACATACCGTGTATATCACGAAACTTCGAAAAAACAACGTATCAACGACGCTGGTGCCACATTAGGAGCACGTCCTCGATCCTTTCGGGTTGTACAGCTTTGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1050018

TTAGGGGGGTTTCACATGTGACATGCGAAGCTAGCTTCGGGTCGAAACCAGGTCGAAACCAGGTCGAAACCACCCCCGAAACCAGGTCCGAAGCCAGCTCGCGAATCCGGGTCCGCAGCCCGGATTCGCCCAACACACATACTTAGTTTCGAGACGTCTGAAATTTTCTATACTATTTTCTTACTCCAATCATGTGATATCAACCCCACTTGGACGCCGAAACCCTCGCGGCGACGAGCATTGCTGTGTGCCGTGGAGCAGAGTGCGCTTATAGTTGCGACAGCCTCCATCAAAATGGTTATGATCTTCATACTATTATAGTTTAGGTGGGAGCGGGGCTAGAGCATCCTCCATGAGCGCGCACGCCTCGCATGTTTCGACATGTTGGGCTTTCCTAGCTCCTGCACGAGGATTACACCGTGGTCGCAGCAACTATGCAACAAAAAAGCTTCAAAGCACTATATGTGCCATACAGAATGTTCGGGGGCGGTGTATGGAGCGAGGTGGACTCGGCATGTCGCGGTTGCGGGCGAGTCACGCATCGGGAACTCACTATGCGTGTAAAATAAGAGTATGGGAGCGCTGGGATTGTATGCGGAGACATAATTCGGCCCTTCCAGAGCTGGATTGGCGCCCACCCAAGGTGGATTCGAGGCAGCCGCATGTGAATCGGATTCGCCCCTGGCTTCGCCGAAGCCAGGTGGATTCACCGAAACCGGGTTGTCACATGTGAAACCCCCCTTA

Copy Cancel