Plant MITE

SE1030019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2960
Chlamydomonas reinhardtii
SE1030019
hAT
Hat5
chromosome_10:5679735-5680370
GGGGTGCG
GTGCGGCACACGGGTATGACGCCGGTCTGGAAAAGGGGTCAAACGGCATGTG

Secondary structure and sequence

TSD TIR

5'

3'

GGG    -GG                         AA      -C     -----       --   -   GACAGGGTTTGCGATGCGGATCAGACCCCAACTTTTGGCAGCAGGTCCGGGACATACGGCTGACGTGCTTCTGTCTGATCCTCATCGCCAAGTAGCTTAAAACCCGCCTGGCGTCCGGGGGGTGCGTTCCGGCCTGCTTGGCACGGTCGGACACGGTGGTCGGGTCGACCACTGAAATAGCTACCGGCGTTCAATCCATATTTGTTTAATACTACTGAGACCTCAAATATCTTGTTTGTGGCCGAGTAAGTGA
   GTGC   CACACGGGTATGACGCCGGTCTGGA  AGGGGT  AAACG     GCATGTG  GTG TTT                                                                                                                                                                                                                                                             
   ||||   |||||||||||||||||||||||||  ||||||  |||||     |||||||  ||| |||                                                                                                                                                                                                                                                              
   CGTG   GTGTGCCCATACTGCGGCCAGACCT  TCCCCG  TTTGC     TGTGCAC  AGA GCG                                                                                                                                                                                                                                                             
 GG    GGG                         -C      TT     ACAGG       AA   G   CGAACGCGTCTAAATCGGAGGGAGAGAGGCCTTAATTCAATATACTGTATATTCCTACAGTTTCAAACCGAGGGCAGCGTAAAACACTCCCACGGACAGCCGTGTAAAGCGCTCCGTACGAAAGCGGTCCCAGCGTGACATTTCGGGGACTGGTAGATTAGTCGGAATATTGCATATCGTATCAGCTGCCGTTAGATCAAACCGCAATTTCGTTTGCCAGACGCGCTCGAACAGCTCGTACAACTGGCGCTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1030019

GGGGTGCGGCACACGGGTATGACGCCGGTCTGGAAAAGGGGTCAAACGGCATGTGGTGTTTGACAGGGTTTGCGATGCGGATCAGACCCCAACTTTTGGCAGCAGGTCCGGGACATACGGCTGACGTGCTTCTGTCTGATCCTCATCGCCAAGTAGCTTAAAACCCGCCTGGCGTCCGGGGGGTGCGTTCCGGCCTGCTTGGCACGGTCGGACACGGTGGTCGGGTCGACCACTGAAATAGCTACCGGCGTTCAATCCATATTTGTTTAATACTACTGAGACCTCAAATATCTTGTTTGTGGCCGAGTAAGTGATGTCGCGGTCAACATGCTCGACAAGCTCGCGCAGACCGTTTGCTTTAACGCCAAACTAGATTGCCGTCGACTATGCTATACGTTATAAGGCTGATTAGATGGTCAGGGGCTTTACAGTGCGACCCTGGCGAAAGCATGCCTCGCGAAATGTGCCGACAGGCACCCTCACAAAATGCGACGGGAGCCAAACTTTGACATCCTTATATGTCATATAACTTAATTCCGGAGAGAGGGAGGCTAAATCTGCGCAAGCGCGGAGAAACACGTGTGGACACGTTTTTGCCCCTCTCCAGACCGGCGTCATACCCGTGTGGGGGTGCGG

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