Plant MITE

SE1030020

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2961
Chlamydomonas reinhardtii
SE1030020
hAT
Hat3
scaffold_19:92111-92385
GCGCGAAG
GCGC

Secondary structure and sequence

TSD TIR

5'

3'

        GAAG       C      -   A    -      G -- AATTT    -     ---     GAAGGCGGAGAAATGTTTTGGGGTTTGGGGCCGCGCATCTACGGAGTGTCGACGTTGTGGGCGGATTGGCGGTATCTTA
    GCGC    CAGTGCT GTATCT TCC TCTA GGCTGT G  A     ACCC CAAAT   CCGCC                                                                               
    ||||    ||||||| |||||| ||| |||| |||||| |  |     |||| |||||   |||||                                                                                
    CGCG    GTCACGG CATAGA CAT CTAC GAAATC C  G     GGCC CAGAT   TCGCA                                                                               
GAAG    ----       C      A   -    C      - GG -----    G     GTG     TCACCGGGGACAGCGCGGTAGATGCGGGTCTTTGCAACCTGTGCGGGGGGTTTGGGGGTTTTGTAGATGCGAGGGACAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1030020

GCGCGAAGCAGTGCTCGTATCTTCCATCTAGGCTGTGGAAATTTACCCCAAATCCGCCGAAGGCGGAGAAATGTTTTGGGGTTTGGGGCCGCGCATCTACGGAGTGTCGACGTTGTGGGCGGATTGGCGGTATCTTAGACAGGGAGCGTAGATGTTTTGGGGGTTTGGGGGGCGTGTCCAACGTTTCTGGGCGTAGATGGCGCGACAGGGGCCACTACGCTGTGTAGACGCCGGGGGCCTAAAGCCATCTACAAGATACCGGCACTGGCGCGAAG

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