Plant MITE

SE1030021

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2962
Chlamydomonas reinhardtii
SE1030021
hAT
Hat6
chromosome_10:256916-257561
GAGGCCGC
GGCCGCCAAGCGGGTCCCACTC

Secondary structure and sequence

TSD TIR

5'

3'

GA    G                 CAGGAAAAA    G CCCCAGGGAGGCGCCCACGGGATGGCACCAAAACCCCTTGGTAGATTGTCCTTCAAGGAAGCCGCCACGTCTACGGATTCATCTCGTCGTCGCTTGCTGATGCTTGAAGGACAATCTATCAGGGGGGTTTCACCGCGTGCCGTCCGGGGGGTGCGTTTCCCCAGCCAAACCCGCACGCCGAGGAGGCCAGGAGACGTCGCCCCGAGAAAAATGCAGAGCGGGATACAGACTCCGCCACTTAATGTATATGTTACATGCAATCTGTTGGAGCAATAGCGCTTGACAG
  GGCC CCAAGCGGGTCCCACTC         GCGT T                                                                                                                                                                                                                                                                                              
  |||| |||||||||||||||||         |||| |                                                                                                                                                                                                                                                                                               
  CCGG GGTTCGCCCAGGGTGAG         CCGG G                                                                                                                                                                                                                                                                                              
CG    A                 ---CGCGTG    - ACGCCCGGCCAGCACAGGGGTCGGGTTATGGAAAGGATATCGTAGAATATAGTGTATATTCCAGTAATCTCATTGGGCCCCCGTAACTTAGCTCGGCCCCGGCTGGAGCTTGTAGATTTACAGCGCAAGCGGTCCTGTGCGGTATGGTCCGGTCTGTCATCGGATTGATGTGGATACGTATATAGACACAACTGCCGTTAGCTATTTCGGGCTTTTGTTGCGGATACATCCTACAACCGAAGCCAGTTAAAGCGCTGAACTCGGAGCTGCTCGTGCAAAATCGGAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1030021

GAGGCCGCCAAGCGGGTCCCACTCCAGGAAAAAGCGTGTCCCCAGGGAGGCGCCCACGGGATGGCACCAAAACCCCTTGGTAGATTGTCCTTCAAGGAAGCCGCCACGTCTACGGATTCATCTCGTCGTCGCTTGCTGATGCTTGAAGGACAATCTATCAGGGGGGTTTCACCGCGTGCCGTCCGGGGGGTGCGTTTCCCCAGCCAAACCCGCACGCCGAGGAGGCCAGGAGACGTCGCCCCGAGAAAAATGCAGAGCGGGATACAGACTCCGCCACTTAATGTATATGTTACATGCAATCTGTTGGAGCAATAGCGCTTGACAGCAGGCTAAAACGTGCTCGTCGAGGCTCAAGTCGCGAAATTGACCGAAGCCAACATCCTACATAGGCGTTGTTTTCGGGCTTTATCGATTGCCGTCAACACAGATATATGCATAGGTGTAGTTAGGCTACTGTCTGGCCTGGTATGGCGTGTCCTGGCGAACGCGACATTTAGATGTTCGAGGTCGGCCCCGGCTCGATTCAATGCCCCCGGGTTACTCTAATGACCTTATATGTGATATAAGATGCTATAGGAAAGGTATTGGGCTGGGGACACGACCGGCCCGCAGGGCCGTGCGCGAGTGGGACCCGCTTGGAGGCCGC

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