SE1030022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2963
  • Chlamydomonas reinhardtii
  • SE1030022
  • hAT
  • Hat12
  • chromosome_3:8352138-8352711
  • CGGTGCGG
  • GTGCGGCAGGGATGGGGGCGGAA

Secondary structure and sequence

TSD    TIR
5'



3'
CG    G                  -T     AGCCCCAAATGCGTGCGGAATGCCCCAAGGATTAACGCACGCACAGCTGGCGAAAATAATATCGCATCCGCCTTGAGAACCTTTCGCATGGTTTTCGCCGGTCCATTGACGCGTCCATCGGCGGTATTTCCTTCCCATTCTGCTTCACCGGCATGCTTGGAACGCTCGTAGTATCCCTTAATGGGCATTAAAGCAGCTGGAGGACGCGCACCGGTGTTCTGCGTCGGGAAATTGCCAAGCATGTGGGGACATGCC
  GTGC GCAGGGATGGGGGCGGAA  GGTGG                                                                                                                                                                                                                                                               
  |||| ||||||||||||||||||  |||||                                                                                                                                                                                                                                                               G
  CGTG CGTCCCTACCCCCGCCTT  GGCGT                                                                                                                                                                                                                                                               
GG    G                  CA     GTAAGGCGTCCCAGAAAAGCGTACACAAAAGCGTGCGAAAAGCGGATCTGGGAACGAACGCGTGTAGCCGCCTTGACACGCTTTTAGGTACGCCTTTACCACGCCAGTGGCGGGGTTTTGGCGGTTTTACCGGGAAGACACCGATGAAGACCCGGACAGACCGGTTTTAGACCGGTGGTGTGGACCAGTATTCCGTTAAACCCGCTGTTTCTGACGATTTTCTCAACTTACCCCGCTGTTGTGGCGACCAACACC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End