Plant MITE

SE1030023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2964
Chlamydomonas reinhardtii
SE1030023
hAT
Hat9
chromosome_3:4432512-4433220
GTGCAAGT
TGCAAGTCAGGGTTGCAC

Secondary structure and sequence

TSD TIR

5'

3'

  G    AG                    CCATTTTCTTATAA      --  TTAATACGCAGTACACAGCTTTCTAGTACAATACACCATAATTCACTTATAATACGCCGGCGAGCAAGGGTTAGTACGTGCTATAGTACGTCCCATGCAACCTATGCCCGGTCCCATTGCAAATTTCGCTCTCCGTGTTCCTCCTTAGTATCCTTCCCTGTATCCTACTATACATTACCATACTCGAGGCCGTTACAGCTCGCTATGCTGTTGGAAACGCATACTTGTTAGTAAATGTCGAGAAATGAGCGGAGTGACAACTGCGCAGCCTTTTTGCCTACTGTTTGGCCATCAAGTATATCCATCCAGAG
   TGCA  TCAGGGTTGCACTGTACTAG              TACGCG  TA                                                                                                                                                                                                                                                                                                                       
   ||||  ||||||||||||||||||||              ||||||  ||                                                                                                                                                                                                                                                                                                                       C
   ACGT  GGTCCCAACGTGTCATGAGT              CATGCA  AT                                                                                                                                                                                                                                                                                                                       
TGA    --                    --------------      CA  CATGCATGATCATGCATGACTCATGATCATGCGGAGAGGACCCAGAGTCATGCCGCGTTTTATGCGGTCCCCCCGCCCCCCGCCCCCACACCCCCAGCGGCCGCCCACGGCCACCGGCCACCAGCACGGCACAGTTACGCAGCCACCGTGTCACGTCACCGCTCTCCGTTGTATCTGCGTTGTATCCGTTGCAGAATTCGTATTATACTAAGACACACACATCAACGAGTGTTGGTTTTCGGACTATAGTCACTGTGCTACCGGCTACGCTACGCGCTTGGCTCGGACGGGATAACCTATGCGCGTTACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1030023

GTGCAAGTCAGGGTTGCACTGTACTAGCCATTTTCTTATAATACGCGTATTAATACGCAGTACACAGCTTTCTAGTACAATACACCATAATTCACTTATAATACGCCGGCGAGCAAGGGTTAGTACGTGCTATAGTACGTCCCATGCAACCTATGCCCGGTCCCATTGCAAATTTCGCTCTCCGTGTTCCTCCTTAGTATCCTTCCCTGTATCCTACTATACATTACCATACTCGAGGCCGTTACAGCTCGCTATGCTGTTGGAAACGCATACTTGTTAGTAAATGTCGAGAAATGAGCGGAGTGACAACTGCGCAGCCTTTTTGCCTACTGTTTGGCCATCAAGTATATCCATCCAGAGCTCCATTGCGCGTATCCAATAGGGCAGGCTCGGTTCGCGCATCGCATCGGCCATCGTGTCACTGATATCAGGCTTTTGGTTGTGAGCAACTACACACACAGAATCATATTATGCTTAAGACGTTGCCTATGTTGCGTCTATGTTGCCTCTCGCCACTGCACTGTGCCACCGACGCATTGACACGGCACGACCACCGGCCACCGGCACCCGCCGGCGACCCCCACACCCCCGCCCCCCGCCCCCCTGGCGTATTTTGCGCCGTACTGAGACCCAGGAGAGGCGTACTAGTACTCAGTACGTACTAGTACGTACTAACACGTACTGAGTACTGTGCAACCCTGGTGCAAGT

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