Plant MITE

SE1030024

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2965
Chlamydomonas reinhardtii
SE1030024
hAT
Hat7
chromosome_2:5126293-5126590
GGCTCACC
CCCAGGGCTTGCATCTTC

Secondary structure and sequence

TSD TIR

5'

3'

GGCTCA                        T     G   --   CA --      - G GCCCTAACCACGTTCTCGCCCACGGCATCCGGGGGCCCAAAAATGCCTAGTTTTTAGCGTTTGGGGGGGGGCTCCGCCCCACCCAAACCCCCCC
      CCCAGGGCTTGCATCTTCCTGGGG GGGCC CCG  CCG  G  GCGAGA A G                                                                                              
      |||||||||||||||||||||||| ||||| |||  |||  |  |||||| | |                                                                                               
      GGGTCCCGAACGTAGAAGCCCCTC GCCGT TCT  GCC  C  GGTTAC T C                                                                                              
CCACTC                        -     -   TC   -- GG      A - CGGGAGCCCGCTCTTTCTAACCCGTTAAGGCCCCCACGTAAGAGCGGCACACCCCGACGTATGCCAGGGGCTTAGAGCGGCTGATGGGGAAAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1030024

GGCTCACCCAGGGCTTGCATCTTCCTGGGGTGGGCCGCCGCCGCAGGCGAGAAGGGCCCTAACCACGTTCTCGCCCACGGCATCCGGGGGCCCAAAAATGCCTAGTTTTTAGCGTTTGGGGGGGGGCTCCGCCCCACCCAAACCCCCCCGGAAAGGGGTAGTCGGCGAGATTCGGGGACCGTATGCAGCCCCACACGGCGAGAATGCACCCCCGGAATTGCCCAATCTTTCTCGCCCGAGGGCCTACATTGGGGCCCGCTTCTTGCCGCTCCCCGAAGATGCAAGCCCTGGGCTCACC

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