SE0520002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2967
  • Capsella rubella
  • SE0520002
  • Mutator
  • M1
  • scaffold_2:6940373-6940920
  • ATTTTTCAT
  • GGGAAAAATGTCAGTTAAATCACGAACTTTCAAATTTTGGCCATTTAAATCACGAACTTTCTATATGGCCATTCAAAACATGAACTTTTCGCTAACTTAGTTTTAAAAACATCATCTTTCGTTGACCAGGCCGAAATGAACACCATATCCTCAAATTCGTTGACAAAGCAGCTAACCATCGTTAATCATATTTGTTAGTGAGAAAAAACGTCGTTTAATGCTAAAAC

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTTTCATA             G        C                                         A        C   A      C    C CT           A  AA                 C        A  A   C       TC     C    A            -----------           -   A             A AA           T        ---------------------------------   ATCTCAAAATCG
          GGGAAAAATGTCA TTAAATCA GAACTTTCAAATTTTGGCCATTTAAATCACGAACTTTCTAT TGGCCATT AAA CATGAA TTTT G  AACTTAGTTTT AA  CATCATCTTTCGTTGAC AGGCCGAA TG ACA CATATCC  AAATT GTTG CAAAGCAGCTAA           CCATCGTTAAT CAT TTTGTTAGTGAGA A  ACGTCGTTTAA GCTAAAAC                                 GAT            
          ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||| |  ||||||||||| ||  ||||||||||||||||| |||||||| || ||| |||||||  ||||| |||| ||||||||||||           ||||||||||| ||| ||||||||||||| |  ||||||||||| ||||||||                                 |||             
          CCCTTTTTACAGT AATTTAGT CTTGAAAGTTTAAAACCGGTAAATTTAGTGCTTGAAAGATA ACCGGTAA TTT GTACTT AAAA C  TTGAATCAAAA TT  GTAGTAGAAAGCAATTG TTCGGTTT AC TGT GTATAGG  TTTAA CAAT GTTTTGTTGATT           GGTAGTGATTA GTA AGATAATCATTCT T  TGCAGCAAATT CGATTTTG                                 TAC            
ATACTTTTTA             A        A                                         C        A   C      A    A AC           A  TG                 T        A  A   A       TT     A    -            GTTTGTAAATC           A   G             C GC           C        TTTCACTCTTTCATCCCTAAACTAAAAACCTAA   TGCAATCTTAGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End