Plant MITE

SE0550004

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2969
Capsella rubella
SE0550004
PIF/harbinger
To2
scaffold_1:13001381-13001858
TTA
AGGGGGTGTTATTGG

Secondary structure and sequence

TSD TIR

5'

3'

TT               ATTCTAAC     A   A   A       CTGA   -   --   - GATTGTATGATTTTAAAGGATTGTTTGAGAGTTTTATATAATCTTGTTGATTAGTTTTTTTAAAGTCTTGTAAAGTCTCTCAAACAATCTATGTATTTATAAGATACTTTTCATGACTTTGATTTGTAAAGAAGAGTGTTTAAAATCATAAACCAATAACATAAAATTTAAATTCATT
  AGGGGGTGTTATTGG        TTATA AGA TTT GATGACT    TGA AAT  CAT A                                                                                                                                                                                  
  |||||||||||||||        ||||| ||| ||| |||||||    ||| |||  ||| |                                                                                                                                                                                   
  TCCCCCACAATAACC        AATAT TCT AAA TTACTGA    TCT CAA  CAT T                                                                                                                                                                                  
AT               AAACACTC     A   C   A       --AA   A   TC   C TAGACAACAATAAGTTAGTTCTAAAATGTTTTGAGAAAATTTCAAACCACAATAATCAATAACTAAACATTTCTCAGTAAGTTTTAGAAGTATTTATACCCACATAACCTATGTCTCAAAATGTTTCAGTAATTTTCAAGACACAATAAGTTAATTTTGTTTTCTTAGAGACTAACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550004

TTAGGGGGTGTTATTGGATTCTAACTTATAAAGAATTTAGATGACTCTGATGAAATCATAGATTGTATGATTTTAAAGGATTGTTTGAGAGTTTTATATAATCTTGTTGATTAGTTTTTTTAAAGTCTTGTAAAGTCTCTCAAACAATCTATGTATTTATAAGATACTTTTCATGACTTTGATTTGTAAAGAAGAGTGTTTAAAATCATAAACCAATAACATAAAATTTAAATTCATTAACAATCAGAGATTCTTTTGTTTTAATTGAATAACACAGAACTTTTAATGACTTTGTAAAACTCTGTATCCAATACACCCATATTTATGAAGATTTTGAATGACTCTTTACAAATCAATAACTAATAACACCAAACTTTAAAAGAGTTTTGTAAAATCTTGATTGAATAACAACAGATTCTACCTAACATCTAAAGTCATTAAAACTCTATATAACTCACAAACCAATAACACCCCCTTA

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