Plant MITE

SE0550005

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2970
Capsella rubella
SE0550005
PIF/harbinger
To3
scaffold_3:6464036-6464408
TTA
AGAGGGGTGTATTCAAAATGGAATTTTAAGAGATTTGAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT  A              A   A       GA      -----     TATTGG      A      -     T             --- -- CATATCACT -   T   ATCCTTTCAAATCTCACCAAAAACTATGGGATTTGGATTTCTGTATTTTTAACTAAGGAAATCCTCCCAAATCCTCTGAAATCCTTC
  AG GGGGTGTATTCAAA TGG ATTTTAA  GATTTG     AGTTT      GGTTTT AATGAT TTTGA GATTTTAGGGAAG   T  T         T TTG AAA                                                                                       
  || |||||||||||||| ||| |||||||  ||||||     |||||      |||||| |||||| ||||| |||||||||||||   |  |         | ||| |||                                                                                       A
  TC CCCCACATAAGTTT ACT TAAAGTT  CTAAAC     TCAAA      TTTAGG TGACAA AAGTT TGTACTTAAAATT   C  A         G ACT TTA                                                                                       
AT  C              C   G       AA      ATTTT     ----TG      -      T     -             TTT AG --------- T   -   GGTGACAATAAGTTGATTACTAAAGTTTTAGGTGTAATTTTAGGTGACAATAACTTTTGTTAAACACCTAAACCGAAAATTACTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550005

TTAGAGGGGTGTATTCAAAATGGAATTTTAAGAGATTTGAGTTTTATTGGGGTTTTAAATGATTTTGATGATTTTAGGGAAGTTCATATCACTTTTGTAAAATCCTTTCAAATCTCACCAAAAACTATGGGATTTGGATTTCTGTATTTTTAACTAAGGAAATCCTCCCAAATCCTCTGAAATCCTTCAAAATCATTAAAAGCCAAATCCACAAATTGTTTTCAATAACAGTGGATTTTAATGTGGATTTTGAAATCATTAGTTGAATAACAGTGGATTTCATGAGACTTTTTAAAATTCATGTTTGAATAACAGTGGATTTGTAAACTTTTTACAAATCAATTGAAATGTCACTTTGAATACACCCCCCTTA

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