SE0550006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2971
  • Capsella rubella
  • SE0550006
  • PIF/harbinger
  • To3
  • scaffold_8:11028580-11028942
  • TTA
  • AGGGGGGTGTATTCAAAGTGGAATTTCAAGTGATTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TT                     A    C   T      -----------------TAA     TTACAAATCC  --        ---     --     -  TAAAAAGTCTCATGAAATCCAGTGTTATTGAACTAATCATTTTAAAATACACCTTAAAATCCACTGTTATTGAAAACAGTTTGTGGATTTGATTT
  AGGGGGGTGTATTCAAAGTGG ATTT AAG GATTTG                    AAGGT          AG  TGTTATTC   AATCA  TGAAT TT                                                                                               
  ||||||||||||||||||||| |||| ||| ||||||                    |||||          ||  ||||||||   |||||  ||||| ||                                                                                                
  TCCCCCCACATAAGTTTCATC TAAA TTC CTAAAC                    CTAAA          AT  ATTGAAGT   CTAAA  CATTT AA                                                                                               
AT                     G    A   T      TCAAAATTACTCTAAAACTA     ----------  CC        ATA     TA     T  GAAAGTTTAGGGTGGATTTTGATACTCTAAACCTAATAATATAAAAATTGATTCCTTCAAGAGACTTTAGGTGATTTTAGGAGACTTTAGTAAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End