SE0520009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2974
  • Capsella rubella
  • SE0520009
  • Mutator
  • M2
  • scaffold_5:4030981-4031423
  • ATTTGTTAT
  • TATGGGAAAACGGGGAAAATCAACCCAGACTATTTCCCGAAGGTATTTTCATACCCAAACTCGCGTACTCTGAATTTTACAACCCAAACCAGCTTTGAATTCAAATAACCCACCTGAACCACATCAAATTTTGTCGATTTCAACCTCGACGTTAACAGTATCCCTGCCCATCTTGAAGATTTGGACAATCAAGCTTATGCTTTTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTGT                                                                   C                        C   G             C        CAC                                   G                   G           C       T    TT  AAAAACTAA
      TATGGGAAAACGGGGAAAATCAACCCAGACTATTTCCCGAAGGTATTTTCATACCCAAACTCGCGTA TCTGAATTTTACAACCCAAACCAG TTT AATTCAAATAACC ACCTGAAC   ATCAAATTTTGTCGATTTCAACCTCGACGTTAACA TATCCCTGCCCATCTTGAA ATTTGGACAAT AAGCTTA GCTT  GT         
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||  ||         G
      ATACCCTTTTGCCCCTTTTAGTTGGGTTTGATAAAGGGCTTCCATAAAAGTATGGGTTTGAGCGCAT AGACTTAAAATGTTGGGTTTGGTC AAA TTAAGTTTATTGG TGGACTTG   TAGTTTAAAACAGTTAAAGTTGGAGCTGCAATTGT ATAGGGACGGGTAGAACTT TAAACCTGTTA TTCGAAT CGAA  CG         
TTGTTT                                                                   A                        A   G             T        ATA                                   A                   A           A       T    TT  AATTAAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3