SE0530010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2975
  • Capsella rubella
  • SE0530010
  • hAT
  • Hat2
  • scaffold_4:7471503-7472260
  • CTATTTGA
  • TAGGCATGTCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTATTTGA             --    CTAGCCCGGCCCGGCCCGGCCCGAAACCCGTAAAGCCTTCATATATGTGAGTCCGGTCCGGTCCGGCCCGAAAAATTTCCGAGCCTATATTTCAAAGCCCGGCCCGGCCCTAACAGGACTACAGGGCTTTTCGGGTTTTTTTGGGCTTTATTTACCGATAAAAAAATCAATTTCTAAGTTCATAATAGTTTTTTTAAAACTATATTTAAAGGTCTACTATAAAAATAATGCATCAAATTTTAAATAACTTATCAATATTCAATAAAACTAACTTAATTTAAGAGAAAAAATAAAAGCCAAATAAATTATTTACACTTTAACCCAATAAAACATGGAACTAAAATACTTTAAAG
        TAGGCATGTCAAT  CGGG                                                                                                                                                                                                                                                                                                                                                                 
        |||||||||||||  ||||                                                                                                                                                                                                                                                                                                                                                                  
        ATCCGTACAGTTA  CCCG                                                                                                                                                                                                                                                                                                                                                                 
AGTTTATC             AT    ATTTCGGGCGCCCGATCAAACCGGGCCGGGACTTTTTTAGCCTGAGCCAGAATTTATATATACAGGTCTTTTTTGGCCCGGAAAACCCGATTCGGGTAAGCCCGATTTCCCAAAAAACCCGAATCGGGCCAGCCCGAGCCCGGCCGGGCTTTTCGGGAATATGTTTATATAAAACTTAAAAAACTTATAAAATCAAACTAATTTTCTAAACTGATTACAATATCAAAAGTATAAATGAATGATCAGAATGAATAATGAAAATTTTAGAAATATGTTTCGATTTTGATTTATATATATTCATAGTACTAAAACTTTAGTAGTTTTATAGATAATTTAAAACTGAGATAGAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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