SE0550011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2976
  • Capsella rubella
  • SE0550011
  • PIF/harbinger
  • To5
  • scaffold_8:11199436-11199635
  • TAA
  • AGGCCATCCTCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              ACATA        AAGT       ATGA   -- T   ----- TAGTTTAATTGAAAAAGTGGATCTTATGATTTCCTTTAGTACCTTATA
  AGGCCATCCTCAAT     ATCCTTAA    GGATCTA    TTT  C TTA     A                                                
  ||||||||||||||     ||||||||    |||||||    |||  | |||     |                                                 
  TCTGGTAGGAGTTA     TAGGAATT    GTACTAG    GAA  T ATG     C                                                
AA              -CCAC        ----       ----   TT G   AAAAC AATTTTAAATTATGTATTAAGTTGAGATATATATTCCATGCATACAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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