Plant MITE

SE0510012

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2977
Capsella rubella
SE0510012
Tc1/Mariner
St2
scaffold_4:3042476-3042728
TA
TACTCCCTCTGTTTCATTATAAGTGATGTTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

                               T  CCAATTTTTCTT     A     ----AG    GTTTTCAATTTCCTATGCAAAAATTTAATGTATTTAATATTTTTTGACCAATTATATTTTACATCAT
TACTCCCTCTGTTTCATTATAAGTGATGTTT AG            GTTTC GTATA      TGAA                                                                   
||||||||||||||||||||||||||||||| ||            ||||| |||||      ||||                                                                   A
ATGAGGGAGACAAAGTAATATTCACTACAAA TC            CAAAG CGTGT      TTAT                                                                   
                               T  ------------     C     GATTTA    TTTGTATATTGAATAGGTAAAGGGTATTTTTGTAGTAATTGATTATACTTAAGTTGGTTATTCTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0510012

TACTCCCTCTGTTTCATTATAAGTGATGTTTTAGCCAATTTTTCTTGTTTCAGTATAAGTGAAGTTTTCAATTTCCTATGCAAAAATTTAATGTATTTAATATTTTTTGACCAATTATATTTTACATCATATTTTCTTATTGGTTGAATTCATATTAGTTAATGATGTTTTTATGGGAAATGGATAAGTTATATGTTTTATTATTTAGTGTGCCGAAACCTTAAACATCACTTATAATGAAACAGAGGGAGTA

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