SE0550017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2982
  • Capsella rubella
  • SE0550017
  • PIF/harbinger
  • To8
  • scaffold_5:8725399-8725537
  • TTA
  • AGGGCATCCTCAATGCAAAGGATCTTAGAGGGTTTTCACCCTAAGATTTGCAAAGAGGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G                       - A       C                        CCTTAT
  AGG CATCCTCAATGCAAAGGATCTTA G GGGTTTT ACCCTAAGATTTGCAAAGAGGGTA      
  ||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||       
  TCT GTAGGAGTTACGTTTCCTAGAAT C CCCAAAA TGGGATTCTAAACGTTTCTCCCAT      
AT   G                       T C       A                        ATAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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