SE0520018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2983
  • Capsella rubella
  • SE0520018
  • Mutator
  • M3
  • scaffold_2:8967103-8967615
  • TATTATTTT
  • GGGAAACTTCCTTAAAAATTCCCCATCTAATTTTAATTTGGAAGCTTAATACCATTGTTATTTGATTGAAAATAAAATGCATGGTTTATTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TATTATTTT      C      A                     A        C        -AT             A                       TTTG   -C           TC                       A  A          ACAAACGATA            T                  A          -----A      -TTA    TTATCGCTCCCAATTC          A  AGTA     CAAT
         GGGAAA TTCCTT AAAATTCCCCATCTAATTTTA TTTGGAAG TTAATACC   TGTTATTTGATTG AAATAAAATGCATGGTTTATTAA    TTG  CTATTAATACA  AAGTATATAAAAATTGTCGAATC AA AAACCGCTTA          ATTGGATTGACG AATCACTAAACCGGGGTT ATGGAATTAC      CTAAAC    GGGT                GATTTGGGGT AT    AAGGA    
         |||||| |||||| ||||||||||||||||||||| |||||||| ||||||||   ||||||||||||| |||||||||||||||||||||||    |||  |||||||||||  ||||||||||||||||||||||| || ||||||||||          |||||||||||| |||||||||||||||||| ||||||||||      ||||||    ||||                |||||||||| ||    |||||     
         CCCTTT AAGGAA TTTTAAGGGGTAGATTAAAAT AAACCTTC AATTATGG   ACAATAAACTAAC TTTATTTTACGTACCAAATAATT    AAC  GATAATTATGT  TTCATATATTTTTAACAGCTTAG TT TTTGGCGAAT          TAGCCTAACTGC TTAGTGATTTGGCTTTAA TGCTTTAGTG      GATTTG    CTCA                TTAAACCCCA TA    TTTCT    
TTTTATTAT      T      A                     C        A        GTT             C                       -TAA   CA           TA                       C  A          ----------            C                  C          ATTAGG      TGTG    ----------------          A  --GG     AACG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End