SE0520023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2988
  • Capsella rubella
  • SE0520023
  • Mutator
  • M5
  • scaffold_1:12145964-12146519
  • ATTTTTTTT
  • TGGGAAAAATGCCATAAAAATCCTGGAGAGTACGATTTCGTTGGTTTAAATCCCGAACTTTCCAACTGTTGATTTAAATCACAAACTTTCTGTTTACTTTCTCTTTAATATGAAACTTTAATTGACTTTGCCAATTTAGGCACATCGTTAAATCGCCAAACGGAGCAATTAAACGGGTTTGAATGTCATTAACGAAATCCGTCAAATACAAAATAAAACCGTTTTTAACATAACCCAAACACTTAATCGATTCAACTTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTTTTTT                                                                                         C    T                         A                         G     T                      -    T  A    A                    CA    A                                              CCCCAAAA
         TGGGAAAAATGCCATAAAAATCCTGGAGAGTACGATTTCGTTGGTTTAAATCCCGAACTTTCCAACTGTTGATTTAAATCACAAACTTT TGTT ACTTTCTCTTTAATATGAAACTTTA TTGACTTTGCCAATTTAGGCACATC TTAAA CGCCAAACGGAGCAATTAAACG GGTT GA TGTC TTAACGAAATCCGTCAAATA  AAAT AAACCGTTTTTAACATAACCCAAACACTTAATCGATTCAACTTTTT        
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| || |||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||         
         ACCCTTTTTACGGTATTTTTAGGACCTCTCATGCTAAAGCAACTAAATTTAGGGCTTGAGAGGTTGACAACTAAATTTAGTGTTTGAAA ACAA TGAGAGAGAAATTATACTTTGAAAT AACTGAAACGGTTAAATCCGTGTAG AATTT GCGGTTTGCCTCGTTAATTTGC CCAA CT ACAG AATTGCTTTAGGCAGTTTAT  TTTA TTTGGCAAAAATTGTATTGGGTTTGTGAATTAGCTAAGTTGAAAGA        
TTTTTTTTT                                                                                         T    C                         C                         A     T                      T    T  -    C                    AC    C                                              CAATTCAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End