Plant MITE

SE0550025

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2990
Capsella rubella
SE0550025
PIF/harbinger
To13
scaffold_2:2700660-2700857
TAA
AGACCATGATTATCAAGAGTCTCTTACACAAATCTTAATATAAGAAAAGTTAAGAAAAGT

Secondary structure and sequence

TSD TIR

5'

3'

TA   C            -  G       -  C          A                    GAAA    AC        -G    T   -     CTTA
  AGA CATGATTATCAA GA TCTCTTA CA AAATCTTAAT TAAGAAAAGTTAAGAAAAGT    AAAA  TAAGAAAA  TGAG AAA TATCT    
  ||| |||||||||||| || ||||||| || |||||||||| ||||||||||||||||||||    ||||  ||||||||  |||| ||| |||||     
  TCT GTACTAATAGTT CT GGAGAAT GT TTTAGAATTG ATTCTTTTCAATTCTTTTCA    TTTT  ATTCTTTT  ATTC TTT ATAGA    
AA   C            A  -       T  -          A                    ATTC    CA        AA    T   C     ATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550025

TAAGACCATGATTATCAAGAGTCTCTTACACAAATCTTAATATAAGAAAAGTTAAGAAAAGTGAAAAAAAACTAAGAAAAGTGAGTAAATATCTCTTAGATAAGATACTTTTCTTAAATTTTCTTAACTTTTCTTAACTTTTCTTAACTTTTCTTAAGTTAAGATTTTGTTAAGAGGTCATTGATAATCATGCTCTAA

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