SE0540027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2992
  • Capsella rubella
  • SE0540027
  • CACTA
  • Ca1
  • scaffold_8:5926723-5926908
  • GAT
  • CACTAGTAAAAAAAATACATATAGCCACTTGGCAGTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAT                ACA                 -  CG   ATTCGTGGCTATAAGGTGATTTTTTTAAAAACAGCCACGAATTTTCC
   CACTAGTAAAAAAAAT   TATAGCCACTTGGCAGT CG  AAA                                               
   ||||||||||||||||   ||||||||||||||||| ||  |||                                                
   GTGATCATTTTTTTTA   ATATCGGTGAACCGTTA GC  CCG                                               
TAG                GAG                 A  -A   ACACGGAATTTAAAGCACCGATATCCCAGCATCTAATTTTTTAAGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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