SE0550029

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2994
  • Capsella rubella
  • SE0550029
  • PIF/harbinger
  • To9
  • scaffold_3:8748506-8748622
  • TAA
  • AGACCATACTCATTGGAGGTTCTTATGGGTAAGATTTATCAAAGAGGGTATGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  AC  TA       -GA    C               A             G  AT
  AG  CA  CTCATTG   GGTT TTATGGGTAAGATTT TCAAAGAGGGTAT TT  
  ||  ||  |||||||   |||| ||||||||||||||| ||||||||||||| ||   
  TC  GT  GAGTAAC   CCAA AATATCCATTCTAAA GGTTTCTCTCATA AA  
AA  CC  AG       ATC    A               C             G  TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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