SE0550030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2995
  • Capsella rubella
  • SE0550030
  • PIF/harbinger
  • To14
  • scaffold_3:11780968-11781221
  • TTA
  • AGAGCATCTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G        ACCAT  -TTCC      T   G        ATT  AATTATACATA     T  TTTTATTTG            TT    ----       -     CA     CT       CT
  AGA CATCTCCA     GG     TTAACA GGG TGTTTATT   GA           TATTA TA         ATGGGTTGCTTA  TAGT    GAAAAAT TGTTT  AAAGT  TTTAAAT  
  ||| ||||||||     ||     |||||| ||| ||||||||   ||           ||||| ||         ||||||||||||  ||||    ||||||| |||||  |||||  |||||||  A
  TCT GTAGAGGT     CC     AATTGT TTC ACAAATAA   CT           ATAAT AT         TACTTAACGAAT  ATCG    TTTTTTA GTAAA  TTTCA  GAATTTG  
AT   G        -AACT  TCACA      T   A        AAT  CTCTATTTTAA     T  TTTTTACCA            CT    ATTT       T     --     AC       TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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