SE0530034

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2999
  • Capsella rubella
  • SE0530034
  • hAT
  • Hat4
  • scaffold_8:12567200-12567412
  • AGTTAGAG
  • TTAGAGCAGGGGCGGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
AG    AG            CAGCCAAAAA     -  -- GGT      TGACAGTTATAGGATTCGAACTCACCATCTCCCATGTATTATGGGTGTAACATAACCATTTT
  TTAG  CAGGGGCGGACC          TGTTA GT  G   GCAAAG                                                              
  ||||  ||||||||||||          ||||| ||  |   ||||||                                                              G
  GATT  GTCCCCGCCTGG          AATAT CA  A   CCACCG                                                              
GA    GA            ------ATGC     C  CC ---      TCGACGGTGGTCATTGAATATTTTACAATTTTTAAAATAATACAAGTATTAACAATTATATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3