SE0520037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3002
  • Capsella rubella
  • SE0520037
  • Mutator
  • M8
  • scaffold_2:7604132-7604762
  • GTATATCAA
  • GTATAT

Secondary structure and sequence

TSD    TIR
5'



3'
          CAAA                               A                        C           A                              G         C                C   T      C      A    --       TTA      -        T                 ATTTTTTTTTTA   TAAATGACCATGTTTCTTAGACGATAAAACGATGTTGGAAGTCGTTTTCTTCCTCCATGGGTCCGCGCTATGGCAACAATTCAACAAGAAGTAAAGAAATTTTGT
    GTATAT    GGGAAAAATGTTATAAAAATCTCGAACTTTC AATTTGGGACGATTTAATCCTGAA TTTAAAGAAGT ATTTTAATCACAAAGTTTTGTTGACTTTTC GTAAAATAG TAAGTTTTGTTGATTT ACT ATTTAA CATGAC TTTA  ATTTTTG   AAAATT TGAAGATG GGTTAACTATCTGTGAG            GTC                                                                                                         
    ||||||    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||| |||||| ||||  |||||||   |||||| |||||||| |||||||||||||||||            |||                                                                                                          
    TATATG    CCCTTTTTACAGTATTTTTAGGGCTTGAAAG TTAAATTCTGCTAAATTAGGGCTT AAATTTTTTCA TAAAATTAGTGTTTCAAAACAACTGAAAAG CATTTTATC ATTCAAAACAACTGAA TGG TAAATT GTGCTG AAAT  TAGAGAC   TTTTAA GTTTCTAC CCAATTGATAGGCACTC            ACG                                                                                                         
AAAC      ----                               C                        A           G                              A         A                T   C      T      C    CA       ---      C        C                 -----------A   AAGGCAAAGTTTGGTGTTTTGCTGCAGCAAATTGTATGGCTTCTTTGATTTAGGGTTTTAGCTAAGTATTAAGTGTTTAGATTGAGGGATTGGGATCTTTTTGGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End